Extended inheritance as reconstruction of extended organization: the paradigmatic case of symbiosis
DOI :
https://doi.org/10.20416/lsrsps.v3i1.343Mots-clés :
extended inheritance, extended organization, persisting organizational constraints, composite biological systems, symbiotic transmissionRésumé
The paper outlines the contours of an organizational perspective on extended inheritance. Based on theoretical studies about biological organization and extended physiology, this perspective allows for the conception of extended biological legacies while keeping a theoretically indispensable distinction between biological systems and their environment. In this context, the line of demarcation between these systems and their surroundings is modelled on an organizational criterion and on the related conceptual distinction between organizational constraints, whose specific role is to harness flows of matter and energy across generations of composite biological systems, and resources exploited by those systems. Biological legacies are restricted to persisting constitutive elements responsible for the reoccurrence of organizational constraints in a given environment. The case of symbiotic transmission is presented as a paradigmatic system illustrating the main proposed conceptual clarifications.
Références
BONDURIANSKY, Russell. 2012. Rethinking heredity, again. Trends in Ecology & Evolution, 27(6), 330-336.
BOUCHARD, Frédéric. 2013. What Is a Symbiotic Superindividual and How Do You Measure Its Fitness? In HUNEMAN, Philippe, BOUCHARD, Frédéric (eds.). From Groups to Individuals: Evolution and Emerging Individuality. Cambridge, MA: MIT Press, Vienna Series in Theoretical Biology. 243-264.
CHAMPAGNE, Frances. 2008. Epigenetic mechanisms and the trans-generational effects of maternal care. Frontiers in neuroendocrinology, 29(3), 386-397.
CLARKE, Ellen. 2010. The problem of biological individuality. Biological Theory, 5(4), 312-325.
CUBAS, Pilar, VINCENT, Coral, COEN, Enrico. 1999. An epigenetic mutation responsible for natural variation in floral symmetry. Nature, 401(6749), 157-161.
DANCHIN, Etienne, CHARMANTIER, Anne, CHAMPAGNE, Frances, MESOUDI, Alex, PUJOL, Benoît, BLANCHET, Simon. 2011. Beyond DNA: integrating inclusive inheritance into an extended theory of evolution. Nature Review Genetics, 12(7), 475-486.
DANCHIN, Etienne, POCHEVILLE, Arnaud. 2014. Inheritance is where physiology meets evolution. The Journal of Physiology, 592(11), 2307-2317.
DARWIN, Charles. 1882. Rôle des vers de terre dans la formation de la terre végétale. Paris : Hachette Livre, BnF.
DE BARY, Anton. 1879. Die Erscheinung der Symbiose. Strasbourg : Verlag von Karl J. Trübner.
DEDEINE, Franck, VAVRE, Fabrice, FLEURY, Frédéric, LOPPIN, Benjamin, HOCHBERG, Michael E., BOULETREAU, Michel. 2001. Removing symbiotic Wolbachia bacteria specifically inhibits oogenesis in a parasitic wasp. Proceedings in National Academic Sciences, 98(11), 6247-6252.
DOUGLAS, Angela E. 2009. The microbial dimension in insect nutritional ecology. Functional Ecology, 23(1), 38-47.
FABIAN, Daniel, FLATT, Thomas. 2012. Life History Evolution. Nature Education Knowledge, 3(10), 24.
GOULD, Stephen J. 1980. Sociobiology and the Theory of Natural Selection. In BARLOW, George W., SILVERBERG, James. (eds.). Sociobiology: Beyond Nature/Nurture ? Boulder, CO: Westview Press Inc. 257-269.
GOULD, Stephen J., LEWONTIN, Richard. 1979. The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme. Proceedings of the Royal Society of London, B, 205(1161), 581-598.
GILBERT, Scott F, SAPP, Jan, TAUBER, Alfred I. 2012. A Symbiotic View of Life: We Have Never Been Individuals. The Quarterly Review of Biology, 87(4), 325-341.
GRIFFITHS, Paul E., GRAY, Russell. 1994. Developmental systems and evolutionary explanation. Journal of Philosophy, 91(6), 277-304.
GRIFFITHS, Paul E., GRAY, Russell. 2004. The Developmental Systems Perspective: Organism-environment systems as units of evolution. In PRESTON, Katherine, PIGLIUCCI, Massimo, (eds.). Phenotypic Integration: Studying the Ecology and Evolution of Complex Phenotypes, Oxford and New York: Oxford University Press. 409-431.
GRIFFITHS, Paul E., STOTZ, Karola. 2013. Genetics and Philosophy: An Introduction. Cambridge: Cambridge University Press.
HANSEN, Allison K., MORAN, Nancy A. 2011. Aphid genome expression reveals host-symbiont cooperation in the production of amino acids. Proceedings in National Academic Sciences, USA, 108(7), 2849-2854.
HOFFMANN, Ary A., TURELLI, Michael, 1997. Cytoplasmic incompatibility in insects. In O’NEILL, Scott L., HOFFMANN, Ary A., WERREN, John H. (eds.). Influential Passengers: Inherited Microorganisms and Arthropod Reproduction. Oxford: Oxford University Press. 42-80.
HOOPER, Lora V., LITTMAN, Dan R., MACPHERSON, Andrew J. 2012. Interactions Between the Microbiota and the Immune System. Science, 336(6086), 1268-1273.
JABLONKA, Eva. 2002. Information: Its interpretation, Its Inheritance and Its sharing. Philosophy of science, 69(4), 578-605.
JABLONKA, Eva, LAMB, Marion. 2005. Evolution in Four Dimensions. Cambridge: MIT Press.
KAMRA, Devki Nandan. 2005. Rumen microbial ecosystem. Current Science, 89(1),124-135.
KANT, Emmanuel. 1993 [1790]. Critique de la faculté de juger. Paris: Vrin.
KAUFFMAN, Stuart. 1995. At home in the universe, The search for the Laws of Self-Organization and Complexity, Oxford, NY: Oxford University Press.
KAUFFMAN, Stuart, LOGAN, Robert K., ESTE, Robert, GOEBEL, Randy, HOBILL, David, SHMULEVICH, Ilya. 2008. Propagating organization: an enquiry. Biology & Philosophy, 23(1), 27-45.
LALAND, Kevin N., ODLING-SMEEE, John, FELDMAN, Marcus W. 2000. Niche construction, biological evolution, and cultural change. Behavioural and brain sciences, 23(1), 131-146.
MAHER, Brendan, 2008. Personal genomes: the case of the missing heritability. Nature, 456(7218), 18-21.
MAMELI, Matteo. 2004. Non genetic Selection and Non genetic Inheritance. British Journal for the Philosophy of science, 55(1), 35-75.
MAMELI, Matteo. 2005. The inheritance of features. Biology & Philosophy, 20(2-3), 365-399.
MARGULIS, Lynn. 1991. Symbiogenesis and Symbionticism. In MARGULIS, Lynn, FESTER, René. (eds.). Symbiosis as a Source of Evolutionary Innovation: Speciation and Morphogenesis. Cambridge, MA: MIT Press. 1-14.
MARGULIS, Lynn, SAGAN, Dorion. 2001. The beast with five genomes. Natural History, 110 (5), 38-41.
MCCUTCHEON, John P., VON DOHLEN, Carol D. 2011. An Interdependant Metabolic Patchwork in the Nested Symbiosis of Mealybugs. Current biology, 21(16), 1366-1372.
MCFALL-NGAI, Margaret. 2002. Unseen forces: the influence of bacteria on animal development. Developmental Biology, 242(1), 1-14.
MESOUDI, Alex, BLANCHET, Simon, CHARMANTIER, Anne, DANCHIN, Etienne, FOGARTY, Laurel, JABLONKA, Eva, LALAND, Kevin N., MORGAN, Thomas J. H., MÜLLER, Gerd B., ODLING-SMEE, John, PUJOL, Benoît. 2013. Is Non-genetic Inheritance Just a Proximate Mechanism ? A corroboration of the Extended Evolutionary Synthesis. Biological Theory, 7(3), 189-195.
MONTEVIL, Maël, MOSSIO, Matteo. 2015. Biological organisation as closure of constraints. Journal of Theoretical Biology, 372, 179-191.
MORAN, Nancy A., MCCUTCHEON, John P., NAKABACHI Atsushi. 2008. Genomics and Evolution of Heritable Bacterial Symbionts. Annual Review of Genetics, 42, 165-190.
MORENO, Alvaro, RUIZ-MIRAZO, Kepa, 2009. The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585-605.
MORGAN, Daniel K., WHITELAW, Emma. 2008, The case for trans-generational epigenetic inheritance in humans. Mammalian Genome, 19(6), 394-397.
MOSSIO, Matteo, SABORIDO, Cristian, MORENO, Alvaro. 2009. An organizational account of biological functions. The British Journal for the Philosophy of Science, 60(4), 813-841.
MOSSIO, Matteo, MORENO, Alvaro. 2010. Organisational Closure in Biological Organisms. History and Philosophy of the Life Sciences, 32(2-3), 269-288.
NYHOLM, Spencer V., MCFALL-NGAI, Margaret. 2004. The winnowing: establishing the squid-vibrio symbiosis. Nature Review Microbiology, 2, 632-642.
ODLING-SMEE, John, LALAND, Kevin N., FELDMAN, Marcus W. 2003. Niche construction; The Neglected Process in Evolution. Princeton: Princeton University Press.
QUELLER, David C., STRASSMANN, Joan E. 2009. Beyond society : the evolution of organismality. Philosophical Transactions of the Royal Society B, 364(1533), 3143-3155.
RICHARDS, Christina, BOSSDORF, Oliver, PIGLIUCCI, Massimo. 2010. What role does heritable epigenetic variation play in phenotypic evolution? BioScience, 60(3), 232-237.
ROSENBERG, Eugene, ZILBER-ROSENBERG, Ilana. 2008. From bacterial bleaching to the hologenome theory of evolution. Proceedings of the 11th international coral reef symposium, Ft Lauderale, Florida, 1, 273-278.
ROSENBERG, Eugene, SHARON, Gil, ZILBER-ROSENBERG, Ilana. 2009. The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework. Environmental Microbiology, 11(12), 2959-2962.
SLAGSVOLD, Tore, WIEBE, Karen L. 2007. Learning the ecological niche. Proc. Biol. Sci., 274(1606), 19-23.
STERELNY, Kim, SMITH, Kelly C., DICKINSON, Michael. 1996. The extended replicator. Biology & Philosophy, 11(3), 377- 403.
STERELNY, Kim, 2001. Niche construction, developmental systems and the extended replicator. In OYAMA, Susan, GRIFFITHS, Paul E., GRAY, Russell (eds.). Cycles of Contingency: Developmental Systems and Evolution. Cambridge, MA: MIT Press. 333-349.
STOTZ, Karola. 2010. Human nature and cognitive-developmental niche construction. Phenomenology and the Cognitive Sciences, 9(4), 483-501.
TEIXEIRA, Luis, FERREIRA, Alvaro, ASHBURNER, Michael. 2008. The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster. PLoS Biol, 6(12), 2753-2763.
TURELLI, Michael, HOFFMANN, Ary A. 1991. Rapid spread of an inherited incompatibility factor in California Drosophila. Nature, 353(6343), 440-442.
TURNER, J. Scott. 2002. A superorganism’s fuzzy boundary. Natural History, 111(6), 62-67.
TURNER, J. Scott. 2004. Extended phenotypes and extended organisms. Biology & Philosophy, 19(3), 327-352.
VAN BAALEN, Minus, JANSEN, Vincent A. 2001. Dangerous liaisons: the ecology of private interest and common good. OIKOS, 95(2), 211-224.
VON BERTALANFFY, Ludwig. 1968. General System theory. New York: Georg Braziller.
WADDINGTON, Conrad. 1942. The epigenotype. Endeavour, 1, 18-20.
WALSH, Denis. 2010. Two neo-Darwinisms. History and Philosophy of the Life Sciences, 32 (2-3), 317-339.
ZIENTZ, Evelyn, DANDEKAR, Thomas, GROSS, Roy. 2004. Metabolic Interdependence of Obligate Intracellular Bacteria and Their Insect Hosts. Microbiology and molecular biology review, 68 (4), 745-770.
BOUCHARD, Frédéric. 2013. What Is a Symbiotic Superindividual and How Do You Measure Its Fitness? In HUNEMAN, Philippe, BOUCHARD, Frédéric (eds.). From Groups to Individuals: Evolution and Emerging Individuality. Cambridge, MA: MIT Press, Vienna Series in Theoretical Biology. 243-264.
CHAMPAGNE, Frances. 2008. Epigenetic mechanisms and the trans-generational effects of maternal care. Frontiers in neuroendocrinology, 29(3), 386-397.
CLARKE, Ellen. 2010. The problem of biological individuality. Biological Theory, 5(4), 312-325.
CUBAS, Pilar, VINCENT, Coral, COEN, Enrico. 1999. An epigenetic mutation responsible for natural variation in floral symmetry. Nature, 401(6749), 157-161.
DANCHIN, Etienne, CHARMANTIER, Anne, CHAMPAGNE, Frances, MESOUDI, Alex, PUJOL, Benoît, BLANCHET, Simon. 2011. Beyond DNA: integrating inclusive inheritance into an extended theory of evolution. Nature Review Genetics, 12(7), 475-486.
DANCHIN, Etienne, POCHEVILLE, Arnaud. 2014. Inheritance is where physiology meets evolution. The Journal of Physiology, 592(11), 2307-2317.
DARWIN, Charles. 1882. Rôle des vers de terre dans la formation de la terre végétale. Paris : Hachette Livre, BnF.
DE BARY, Anton. 1879. Die Erscheinung der Symbiose. Strasbourg : Verlag von Karl J. Trübner.
DEDEINE, Franck, VAVRE, Fabrice, FLEURY, Frédéric, LOPPIN, Benjamin, HOCHBERG, Michael E., BOULETREAU, Michel. 2001. Removing symbiotic Wolbachia bacteria specifically inhibits oogenesis in a parasitic wasp. Proceedings in National Academic Sciences, 98(11), 6247-6252.
DOUGLAS, Angela E. 2009. The microbial dimension in insect nutritional ecology. Functional Ecology, 23(1), 38-47.
FABIAN, Daniel, FLATT, Thomas. 2012. Life History Evolution. Nature Education Knowledge, 3(10), 24.
GOULD, Stephen J. 1980. Sociobiology and the Theory of Natural Selection. In BARLOW, George W., SILVERBERG, James. (eds.). Sociobiology: Beyond Nature/Nurture ? Boulder, CO: Westview Press Inc. 257-269.
GOULD, Stephen J., LEWONTIN, Richard. 1979. The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme. Proceedings of the Royal Society of London, B, 205(1161), 581-598.
GILBERT, Scott F, SAPP, Jan, TAUBER, Alfred I. 2012. A Symbiotic View of Life: We Have Never Been Individuals. The Quarterly Review of Biology, 87(4), 325-341.
GRIFFITHS, Paul E., GRAY, Russell. 1994. Developmental systems and evolutionary explanation. Journal of Philosophy, 91(6), 277-304.
GRIFFITHS, Paul E., GRAY, Russell. 2004. The Developmental Systems Perspective: Organism-environment systems as units of evolution. In PRESTON, Katherine, PIGLIUCCI, Massimo, (eds.). Phenotypic Integration: Studying the Ecology and Evolution of Complex Phenotypes, Oxford and New York: Oxford University Press. 409-431.
GRIFFITHS, Paul E., STOTZ, Karola. 2013. Genetics and Philosophy: An Introduction. Cambridge: Cambridge University Press.
HANSEN, Allison K., MORAN, Nancy A. 2011. Aphid genome expression reveals host-symbiont cooperation in the production of amino acids. Proceedings in National Academic Sciences, USA, 108(7), 2849-2854.
HOFFMANN, Ary A., TURELLI, Michael, 1997. Cytoplasmic incompatibility in insects. In O’NEILL, Scott L., HOFFMANN, Ary A., WERREN, John H. (eds.). Influential Passengers: Inherited Microorganisms and Arthropod Reproduction. Oxford: Oxford University Press. 42-80.
HOOPER, Lora V., LITTMAN, Dan R., MACPHERSON, Andrew J. 2012. Interactions Between the Microbiota and the Immune System. Science, 336(6086), 1268-1273.
JABLONKA, Eva. 2002. Information: Its interpretation, Its Inheritance and Its sharing. Philosophy of science, 69(4), 578-605.
JABLONKA, Eva, LAMB, Marion. 2005. Evolution in Four Dimensions. Cambridge: MIT Press.
KAMRA, Devki Nandan. 2005. Rumen microbial ecosystem. Current Science, 89(1),124-135.
KANT, Emmanuel. 1993 [1790]. Critique de la faculté de juger. Paris: Vrin.
KAUFFMAN, Stuart. 1995. At home in the universe, The search for the Laws of Self-Organization and Complexity, Oxford, NY: Oxford University Press.
KAUFFMAN, Stuart, LOGAN, Robert K., ESTE, Robert, GOEBEL, Randy, HOBILL, David, SHMULEVICH, Ilya. 2008. Propagating organization: an enquiry. Biology & Philosophy, 23(1), 27-45.
LALAND, Kevin N., ODLING-SMEEE, John, FELDMAN, Marcus W. 2000. Niche construction, biological evolution, and cultural change. Behavioural and brain sciences, 23(1), 131-146.
MAHER, Brendan, 2008. Personal genomes: the case of the missing heritability. Nature, 456(7218), 18-21.
MAMELI, Matteo. 2004. Non genetic Selection and Non genetic Inheritance. British Journal for the Philosophy of science, 55(1), 35-75.
MAMELI, Matteo. 2005. The inheritance of features. Biology & Philosophy, 20(2-3), 365-399.
MARGULIS, Lynn. 1991. Symbiogenesis and Symbionticism. In MARGULIS, Lynn, FESTER, René. (eds.). Symbiosis as a Source of Evolutionary Innovation: Speciation and Morphogenesis. Cambridge, MA: MIT Press. 1-14.
MARGULIS, Lynn, SAGAN, Dorion. 2001. The beast with five genomes. Natural History, 110 (5), 38-41.
MCCUTCHEON, John P., VON DOHLEN, Carol D. 2011. An Interdependant Metabolic Patchwork in the Nested Symbiosis of Mealybugs. Current biology, 21(16), 1366-1372.
MCFALL-NGAI, Margaret. 2002. Unseen forces: the influence of bacteria on animal development. Developmental Biology, 242(1), 1-14.
MESOUDI, Alex, BLANCHET, Simon, CHARMANTIER, Anne, DANCHIN, Etienne, FOGARTY, Laurel, JABLONKA, Eva, LALAND, Kevin N., MORGAN, Thomas J. H., MÜLLER, Gerd B., ODLING-SMEE, John, PUJOL, Benoît. 2013. Is Non-genetic Inheritance Just a Proximate Mechanism ? A corroboration of the Extended Evolutionary Synthesis. Biological Theory, 7(3), 189-195.
MONTEVIL, Maël, MOSSIO, Matteo. 2015. Biological organisation as closure of constraints. Journal of Theoretical Biology, 372, 179-191.
MORAN, Nancy A., MCCUTCHEON, John P., NAKABACHI Atsushi. 2008. Genomics and Evolution of Heritable Bacterial Symbionts. Annual Review of Genetics, 42, 165-190.
MORENO, Alvaro, RUIZ-MIRAZO, Kepa, 2009. The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585-605.
MORGAN, Daniel K., WHITELAW, Emma. 2008, The case for trans-generational epigenetic inheritance in humans. Mammalian Genome, 19(6), 394-397.
MOSSIO, Matteo, SABORIDO, Cristian, MORENO, Alvaro. 2009. An organizational account of biological functions. The British Journal for the Philosophy of Science, 60(4), 813-841.
MOSSIO, Matteo, MORENO, Alvaro. 2010. Organisational Closure in Biological Organisms. History and Philosophy of the Life Sciences, 32(2-3), 269-288.
NYHOLM, Spencer V., MCFALL-NGAI, Margaret. 2004. The winnowing: establishing the squid-vibrio symbiosis. Nature Review Microbiology, 2, 632-642.
ODLING-SMEE, John, LALAND, Kevin N., FELDMAN, Marcus W. 2003. Niche construction; The Neglected Process in Evolution. Princeton: Princeton University Press.
QUELLER, David C., STRASSMANN, Joan E. 2009. Beyond society : the evolution of organismality. Philosophical Transactions of the Royal Society B, 364(1533), 3143-3155.
RICHARDS, Christina, BOSSDORF, Oliver, PIGLIUCCI, Massimo. 2010. What role does heritable epigenetic variation play in phenotypic evolution? BioScience, 60(3), 232-237.
ROSENBERG, Eugene, ZILBER-ROSENBERG, Ilana. 2008. From bacterial bleaching to the hologenome theory of evolution. Proceedings of the 11th international coral reef symposium, Ft Lauderale, Florida, 1, 273-278.
ROSENBERG, Eugene, SHARON, Gil, ZILBER-ROSENBERG, Ilana. 2009. The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework. Environmental Microbiology, 11(12), 2959-2962.
SLAGSVOLD, Tore, WIEBE, Karen L. 2007. Learning the ecological niche. Proc. Biol. Sci., 274(1606), 19-23.
STERELNY, Kim, SMITH, Kelly C., DICKINSON, Michael. 1996. The extended replicator. Biology & Philosophy, 11(3), 377- 403.
STERELNY, Kim, 2001. Niche construction, developmental systems and the extended replicator. In OYAMA, Susan, GRIFFITHS, Paul E., GRAY, Russell (eds.). Cycles of Contingency: Developmental Systems and Evolution. Cambridge, MA: MIT Press. 333-349.
STOTZ, Karola. 2010. Human nature and cognitive-developmental niche construction. Phenomenology and the Cognitive Sciences, 9(4), 483-501.
TEIXEIRA, Luis, FERREIRA, Alvaro, ASHBURNER, Michael. 2008. The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster. PLoS Biol, 6(12), 2753-2763.
TURELLI, Michael, HOFFMANN, Ary A. 1991. Rapid spread of an inherited incompatibility factor in California Drosophila. Nature, 353(6343), 440-442.
TURNER, J. Scott. 2002. A superorganism’s fuzzy boundary. Natural History, 111(6), 62-67.
TURNER, J. Scott. 2004. Extended phenotypes and extended organisms. Biology & Philosophy, 19(3), 327-352.
VAN BAALEN, Minus, JANSEN, Vincent A. 2001. Dangerous liaisons: the ecology of private interest and common good. OIKOS, 95(2), 211-224.
VON BERTALANFFY, Ludwig. 1968. General System theory. New York: Georg Braziller.
WADDINGTON, Conrad. 1942. The epigenotype. Endeavour, 1, 18-20.
WALSH, Denis. 2010. Two neo-Darwinisms. History and Philosophy of the Life Sciences, 32 (2-3), 317-339.
ZIENTZ, Evelyn, DANDEKAR, Thomas, GROSS, Roy. 2004. Metabolic Interdependence of Obligate Intracellular Bacteria and Their Insect Hosts. Microbiology and molecular biology review, 68 (4), 745-770.
Téléchargements
Publiée
2016-12-01
Comment citer
Pontarotti, Gaëlle. 2016. « Extended Inheritance As Reconstruction of Extended Organization: The Paradigmatic Case of Symbiosis ». Lato Sensu: Revue De La Société De Philosophie Des Sciences 3 (1). https://doi.org/10.20416/lsrsps.v3i1.343.
Numéro
Rubrique
Actes du congrès de 2014 (contributions hors thème)
Licence
Ce travail est disponible sous licence Creative Commons Attribution - Pas d'Utilisation Commerciale - Pas de Modification 4.0 International.
Les auteurs conservent le droit d'auteur et accordent à la revue le droit de première publication, l'ouvrage étant alors disponible simultanément, sous la licence Licence d’attribution Creative Commons permettant à d'autres de partager l'ouvrage tout en en reconnaissant la paternité et la publication initiale dans cette revue.
