Biodiversity databanks and scientific exploration
DOI :
https://doi.org/10.20416/LSRSPS.V8I2.4Mots-clés :
biodiversité, banque de données, exploration scientifique, savoir de la biodiversitéRésumé
For several decades now, biologists have been developing digital databanks, which are remarkable scientific instruments allowing scientists to accelerate the development of biological knowledge. From the beginnings of the Human Genome Project (HGP) onwards, genetic databanks have been a major component of current biological knowledge, and biodiversity databanks have also been developed in the wake of the HGP. The purpose of this paper is to identify the specific features of biodiversity data and databanks, and to point out their contribution to biodiversity knowledge.
Références
ANKENY, R.A. and LEONELLI, S. 2015. Valuing Data in Postgenomic Biology: How Data
Donation and Curation Practices Challenge the Scientific Publication System. In RICHARDSON, Sarah S. andSTEVENS, Hallam (eds.). Postgenomics: Perspectives on Biology After the Genome. Durham, NC and London, UK: Duke University Press. 126–149. Lien
Sterner, Beckett W., Gilbert, Edward .E., and Franz, Nico.M. Decentralized but globally coordinated biodiversity data. Frontiers in Big Data, Oct. 2020. Lien
Bowker, Geoffrey C. 2000. Biodiversity datadiversity. Social Studies of Science, 30: 643–683. Lien
Brigandt, Ingo., ed. 2013. Integration in Biology: Philosophical Perspectives on the Dynamics of Interdisciplinarity. Special section of Studies in History and Philosophy of Biological and Biomedical Sciences (Volume 44, Issue 4, Part A, pp. 461–571). Lien
Burian, Richard M. 1997. Exploratory experimentation and the role of histochemical techniques in the work of Jean Brachet, 1938–1952. History and Philosophy of the Life Sciences, 19: 27–45. Lien
Burian, Richard M. 2007. On microRNA and the Need for Exploratory Experimentation in Post-Genomic Molecular Biology. History and Philosophy of the Life Sciences, 29(3). Lien
Callebaut, Werner. 2012. Scientific perspectivism: A philosopher of science’s response to the challenge of big data biology. Studies in History and Philosophy of Biological and Biomedical Sciences, 43(1): 69–80. Lien
Costello, Mark John, Claus, Simon, Dekeyzer, Stefanie, Vandepitte, Leen, Tuama, Éamonn Ó, Lear, Dan, Tyler-Walters, Harvey. 2015. Biological and ecological traits of marine species. Peer J., 3: e1201. Lien
Devictor, Vincent, Bensaude-Vincent, Bernadette. 2016. From ecological records to big data: the invention of global biodiversity. History and Philosophy of the Life Sciences, 38: 13. Lien
Franklin, Allan, Perovic, Slobodan. Experiment in Physics, The Stanford Encyclopedia of Philosophy (Winter 2019 Edition), ed. Edward N. Zalta. Lien
FRANZ, Nico, THAU, David. 2011. Biological taxonomy and ontology development. Biodivers. Inform., 7: 45–66. Lien
Hortal, Joaquín , de Bello, Francesco, Diniz-Filho, José Alexandre F., Lewinsohn, Thomas M., Labo, Jorge M., Ladle,Richard J. 2015. Seven shortfalls that beset large-scale knowledge of biodiversity. Annu. Rev. Ecol. Evol. Syst., 46: 523–549. Lien
Leonelli, Sabina. 2013. Integrating data to acquire new knowledge: Three modes of integration in plant science. Studies in History and Philosophy of Biological and Biomedical Sciences. Lien
Leonelli, Sabina. 2016. Data-Centric Biology: A Philosophical Study. Chicago, IL: University of Chicago Press.
Maxson Jones, Kathryn, Ankeny, Rachel A., Cook-Deegan, Robert. 2018. The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project. Journal of the History of Biology, 51: 693–805. Lien
Müller-Wille, Staffan, Charmantier, Isabelle. 2012. Natural history and information overload: The case of Linnaeus. Studies in History and Philosophy of Biology and Biomedical Sciences, 43: 4–15. Lien
Pante, Eric, Schoelink, Charlotte, Puillandre, Nicolas. 2014. From Integrative Taxonomy to Species Description: One Step Beyond. Systematic Biology, 64(1): 152–160. Lien
Peterson, Andrew T., Knapp, Sandra, Guralnick, Robert, Soberón, Jorge, Holder, Mark T.. 2010. The big questions for biodiversity informatics. Syst. Biodivers., 8: 159–168. Lien
Steinle, Friedrich. 1997. Entering new fields: Exploratory uses of experimentation. Philosophy of Science, 4 Suppl.: S65–S74. Lien
Stevens, Hallam. 2013. Life out of sequence—A data-driven history of bioinformatics. Chicago: University of Chicago Press.
Stevens, Hallam. 2015. The Politics of Sequence: Data Sharing and the Open-Source Software Movement. Information & Culture, 50(4): 465–503. Lien
Strasser, Bruno J. 2011. The Experimenter’s Museum. GenBank, Natural History, and the Moral
Economies of Biomedicine. Isis, 102: 60–96. Lien
Strasser, Bruno J. 2012. Data-driven sciences: From wonder cabinets to electronic databases. Studies in History and Philosophy of Biological and Biomedical Sciences, 43 (2012): 85–87. Lien
Strasser, Bruno J. 2019. Collecting Experiments: Making Big Data Biology. Chicago: University of Chicago.
Waters, C.K. 2004. What was classical genetics? Studies in History and Philosophy of Science, 35: 783–809. Lien
Wylie, Caitlin Donahue. 2019. Overcoming the underdetermination of specimens. Biology & Philosophy, 34: 24. Lien
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(c) Tous droits réservés Anouk Barberousse 2021
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